PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g01351.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 354aa    MW: 40868.4 Da    PI: 4.4347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g01351.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.1e-142731895
                              --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                              +p +f+  + +gk   + ++ l+d+ g+ W + l   k  +  ++++GW +F ++n ++ gDf++F +dg+  f   +k
  Peaxi162Scf00016g01351.1  2 IPASFT-MYkNGK--LPEKVALRDKYGNMWPIGL--AKIERDLYFQEGWDKFTEENSVENGDFFIFDYDGNGVFD--FK 73
                              888997.553444..6779***************..*********************************988774..33 PP

2B336.21e-11252331990
                               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                               ++ ++++l++p + +++++++   + ++t++d+ gr++e kl+++k + r++lt+GW + ++ n ++ +D ++ ++++   ++
  Peaxi162Scf00016g01351.1 252 HAKRRDMLYIPADVLKDYNIE--LPSKMTIRDSAGREFEAKLKIWKDG-RIWLTGGWGRLCRWNLVEKKDRCICEFVRGkGKR 331
                               567899************866..6779***************999996.89**********************9988653444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.312178IPR003340B3 DNA binding domain
CDDcd100178.76E-11275No hitNo description
PfamPF023628.1E-12270IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-15280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16280IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-4278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-16240340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-16240328IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.968244343IPR003340B3 DNA binding domain
CDDcd100174.01E-9245330No hitNo description
SMARTSM010190.0015247343IPR003340B3 DNA binding domain
PfamPF023625.8E-10252333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
KIPASFTMYK NGKLPEKVAL RDKYGNMWPI GLAKIERDLY FQEGWDKFTE ENSVENGDFF  60
IFDYDGNGVF DFKLLGRTGC QKIGAGGLKS AVKSEDEEEE EEMNTHQKSE EPKVMNFDMD  120
SDSIISSSDS DEDYMVEEDD EEDEEYEVAE QETEDEATEE EEEEEASEEE EEANEKTVTL  180
KRKAPPSKET AEEEEENEMQ VILESKGPHS KAKCGRAKET KKREFVDYYG ADIFKSGLAT  240
QPKNPYFVAR VHAKRRDMLY IPADVLKDYN IELPSKMTIR DSAGREFEAK LKIWKDGRIW  300
LTGGWGRLCR WNLVEKKDRC ICEFVRGKGK RGLYLQVQVL HEEQLPTAAR KNSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351837.11e-112PREDICTED: B3 domain-containing protein At5g60140-like
TrEMBLM1AQ141e-112M1AQ14_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000276731e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.16e-14B3 family protein